﻿/* 
* Copyright (c) 2009, The University of Texas at Austin
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* are permitted provided that the following conditions are met:
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* 1. Redistributions of source code must retain the above copyright notice, 
* this list of conditions and the following disclaimer.
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* this list of conditions and the following disclaimer in the documentation and/or other materials 
* provided with the distribution.
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using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using Bio.Data.Interfaces;

namespace Bio.Data.Providers.Structure
{
    public class RNASecondaryStructureModel : BioExtensiblePropertyBase, IStructureModelBioEntity
    {
        #region IStructureModelBioEntity Members

        public IBioSequence Sequence
        {
            get { return _sequence; }
        }

        public IList<IBasePairBioEntity> BasePairs
        {
            get { return _basePairs; }
            set { _basePairs = value; }
        }

        public IList<IStructureExtentBioEntity> Extents
        {
            get { return _structureExtents; }
            set { _structureExtents = value; }
        }

        #endregion

        private IList<IBasePairBioEntity> _basePairs;
        private IList<IStructureExtentBioEntity> _structureExtents;
        private IBioSequence _sequence;

        public RNASecondaryStructureModel(string name, IBioSequence sequence)
        {
            _sequence = sequence;
            _structureExtents = new List<IStructureExtentBioEntity>();
            _basePairs = new List<IBasePairBioEntity>();
        }
    }
}
